PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01237.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 434aa    MW: 47767.6 Da    PI: 7.102
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01237.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17136185155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Rsa1.0_01237.1_g00007.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                              78*******************......55************************997 PP

2AP243.29.8e-14228278155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Rsa1.0_01237.1_g00007.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 278
                              89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15136194IPR016177DNA-binding domain
PROSITE profilePS5103217.622137193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-17137193IPR001471AP2/ERF domain
SMARTSM003803.0E-32137199IPR001471AP2/ERF domain
CDDcd000181.86E-11137192No hitNo description
PfamPF008472.7E-9228278IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17228288IPR016177DNA-binding domain
CDDcd000183.64E-26228288No hitNo description
Gene3DG3DSA:3.30.730.101.8E-16229286IPR001471AP2/ERF domain
SMARTSM003804.5E-32229292IPR001471AP2/ERF domain
PROSITE profilePS5103215.672229286IPR001471AP2/ERF domain
PRINTSPR003674.8E-6230241IPR001471AP2/ERF domain
PRINTSPR003674.8E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MWDLNDSPHQ TLPQEESEEL CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPL  60
ITHQFFPEME TSVGDGGGGG GGPGSGFPRS HWFGVKFCQS DLATGSSAAK PTTVAAVVEP  120
AQPLKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGVEADI NFTIEDYDDD LKQMTNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKD AVTNFDPSIY DDELNAESSG  300
NHIQQDHNLD LSLGNSVNSK QKGQDMRLKM NQQDSLHPNE ILGLGQTGMV NHIPNSNLQF  360
PGSSNIGSGG GFSLFPVAEN HRFDGRTTTN QVLANAAASS GFSPHHHNQI FNSTSTSHQN  420
WLQSNGFQPP LMRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0418870.0JX041887.1 Brassica juncea cultivar Varuna AP2 variant 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643410.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X4
RefseqXP_013643409.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X3
SwissprotP479270.0AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLT1QFV40.0T1QFV4_BRAJU; AP2 variant 1
STRINGBra011741.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.20.0AP2 family protein